PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn277561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TCP
Protein Properties Length: 450aa    MW: 49108.2 Da    PI: 7.0871
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn277561genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.36.7e-351142272100
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssasec.eaesssssasnsssg.. 88 
                 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++         +    ++  e+++ + s +  ss+  
  Achn277561 114 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELDELppwkptsgdQ----NNPhEPQQIRDSFGGTSSNil 208
                 79**************************************************************7766543321....111233333333333333355 PP

         TCP  89 ......kaaksaa.kskks 100
                       +++++ +  ++ +
  Achn277561 209 laggdvQHQEQLMeMTNAR 227
                 5555552222222233333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-31114213IPR005333Transcription factor, TCP
PROSITE profilePS5136933.064116174IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MPSLSSTTTN RIVRTFYTRT PLLLLRPIVK TDLCAKLRKT GHRHVEEEEN QNQHQSPKKR  60
SYLSSSSSLG QNVEYVQGKM EETQHHRQTP SRLGLRHAGG EIVEVEGGHI VRSTGRKDRH  120
SKVCTAKGPR DRRVRLAAHT AIQFYDVQDR LGYDRPSKAV DWLIKNAKAA IDELDELPPW  180
KPTSGDQNNP HEPQQIRDSF GGTSSNILLA GGDVQHQEQL MEMTNAREND SGGFLPASLD  240
SDAIADTIKS FFPMGGASAE TNNSSSMQFQ NFPPPDLLSR TGGQRQQDLR LSLQSMDDQI  300
LLHHQHQPPP QSQPLFSGLG FDAATSGGWW NAGGGDAASS GGGGGGFIFN SPPPPTPFFG  360
QNNQFVSQRG PLQSSNTPYV RTWIDPCSIS AAADHHHQSV PLHPSFSGIS FASVGGFSGF  420
RIPTRLQGEE EEHDGISDKP SSASSDSRH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4688631e-67AM468863.2 Vitis vinifera contig VV78X023076.3, whole genome shotgun sequence.
GenBankFQ3818311e-67FQ381831.1 Vitis vinifera clone SS0ABG82YF20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082738.11e-140PREDICTED: transcription factor TCP4-like
RefseqXP_011082737.11e-140PREDICTED: transcription factor TCP4-like
SwissprotQ9MAH87e-94TCP3_ARATH; Transcription factor TCP3
TrEMBLM4PM761e-126M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322681e-122(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-50TCP family protein